Supplementary Table 3: Comparison of four software in terms of mapping percentage averages.
Software |
Sample |
Total Sequence (AVERAGE) |
Un Mapped (AVERAGE) |
Total Mapped (AVERAGE) |
1 Paired (AVERAGE) |
> 1 Paired (AVERAGE) |
Un Mapped (AVERAGE) (%) |
Total Mapped (AVERAGE) (%) |
1 Paired((AVERAGE)(%) |
>1 Paired(AVERAGE)(%) |
HISAT2 |
2045 |
18856393.89 |
1417277.889 |
17455782.67 |
16826840.5 |
628942.1667 |
7.558871667 |
92.52623056 |
89.20201278 |
3.324218333 |
Tophat2 |
2045 |
18856393.89 |
1084243.778 |
17772150.39 |
16565979.83 |
1206170.778 |
5.803278333 |
94.19672167 |
87.81203444 |
6.384687222 |
Bowtie2 |
2045 |
18868804.93 |
5175759.481 |
13693971.39 |
10933493.13 |
2760478.275 |
27.45770389 |
72.54702401 |
57.91073651 |
14.63628698 |