Supplementary Table 3: Comparison of four software in terms of mapping percentage averages.

Software

Sample

Total Sequence (AVERAGE)

Un Mapped (AVERAGE)

Total Mapped (AVERAGE)

1 Paired (AVERAGE)

> 1 Paired (AVERAGE)

Un Mapped (AVERAGE) (%)

Total Mapped (AVERAGE) (%)

1 Paired((AVERAGE)(%)

>1 Paired(AVERAGE)(%)

HISAT2

2045

18856393.89

1417277.889

17455782.67

16826840.5

628942.1667

7.558871667

92.52623056

89.20201278

3.324218333

Tophat2

2045

18856393.89

1084243.778

17772150.39

16565979.83

1206170.778

5.803278333

94.19672167

87.81203444

6.384687222

Bowtie2

2045

18868804.93

5175759.481

13693971.39

10933493.13

2760478.275

27.45770389

72.54702401

57.91073651

14.63628698