Supplementary Table 1: The accession number, number of samples and related study title of data used in this study that obtained from different experiments (~116 billion reads).
Accession number |
Samples |
Title |
GSE130401 |
21 |
The hippo pathway effector protein YAP modulated resistance to trametinib neuroblastomas with hyperactivated RAS pathway signalling |
GSE137290 |
21 |
Distinct mechanisms of acquired resistance to oncogenic kinase inhibition in cancer cells revealed using a single-step, high-dose selection scheme |
GSE135902 |
40 |
The Transcriptome Of Cmml Monocytes Is Highly Inflammatory And Reflects Leukemia-Specific And Age-Related Alterations |
GSE124326 |
480 |
Whole blood transcriptome analysis in bipolar disorder reveals strong lithium effect |
GSE120597 |
50 |
Genetic Abnormalities in Large to Giant Congenital Nevi: Beyond NRAS mutations |
GSE139250 |
51 |
Exploring the impact of chonic hypoxia on the expression of DNA repair gene in Glioblastoma and Medulloblastoma cells. |
GSE129705 |
128 |
RNA-sequencing of whole blood samples from biologic naïve rheumatoid arthritis patients initiating anti-TNF treatment |
GSE115046 |
110 |
Massively parallel characterization of regulatory dynamics during neural induction |
GSE139181 |
33 |
Transcriptomics analysis of trimester-specific full-term placentas from three Zika virus-infected women |
GSE130289 |
139 |
Dynamics of Trophoblast Differentiation in Peri-implantation Stage Human Embryos |
GSE118912 |
32 |
Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations |
GSE105160 |
197 |
RNASeq of mouse, human, and non-human primate primary dermal fibroblasts to poly(I:C) transfection |
GSE138988 |
24 |
Transcriptome-wide comparison of stress granules and P-bodies reveals that translation plays a major role in RNA partitioning |
GSE138853 |
30 |
Impact of transcriptional mutagenesis on p53 transactivation |
GSE137392 |
60 |
MITF regulates SCD and fatty acid saturation to control melanoma phenotypic state. |
GSE137391 |
24 |
Transcriptomics profiling of some commonly used cell lines at the base-line culture condition |
GSE137390 |
36 |
Lineage-restricted regulation of SCD and fatty acid saturation by MITF controls melanoma phenotypic plasticity |
GSE116698 |
76 |
Co-Stimulation–Induced AP-1 Activity is Required for Chromatin Opening During T Cell Activation. |
GSE112855 |
45 |
Next generation sequencing profiling experimental circulating tumor cells-derived metastatic variants [RNA-seq] |
GSE138730 |
32 |
Altered m6A Modification of Specific Cellular Transcripts Affects Flaviviridae Infection |
GSE124685 |
84 |
mRNA Sequencing to identify transcriptional changes in early and late stages of lung in human Idiopathic Pulmonary Fibrosis |
GSE94690 |
40 |
eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5’UTR |
GSE138485 |
46 |
Retrospective gene expression analysis of human RNA samples from Hepatocellular Carcinoma in relation with survival |
GSE130751 |
63 |
Non-oncogene addiction to SIRT3 plays a critical role in lymphomagenesis |
GSE127696 |
78 |
Transcriptomic profile of cystic fibrosis airway epithelial cells undergoing repair |
GSE133151 |
74 |
Clonal selection confers distinct evolutionary trajectories in BRAF-driven cancers |
GSE125873 |
31 |
RNA-Seq of blood in preterm infants with Bronchopulmonary dysplasia. |