| Species namesa | Common namesb | ESTs | Prefix for tracking EST source |
| P. persica | Peach | 81200 | pe |
| P. armeniaca | Apricot | 15233 | ar |
| P. avium | Sweet Cherry | 12372 | av |
| P. mume | Japanese Apricot | 4660 | mu |
| P. dulcis (P. amygdalus) | Almond | 4006 | du |
| P. cerasus | Sour Cherry | 1266 | ce |
| P. domestica | European Plum | 54 | do |
| P. salicina | Chinese Plum | 59 | sa |
| P. serotine | Black Cherry | 13 | so |
| P. serrulata | Flowering Cherry | 13 | su |
| P. avium x cerasus x canescens | Cherry hybrid | 89 | hy |
| Total | 118965 |