Table 3a: Description of Wnt/β-catenin Genes Analyzed by Q-PCR.

Symbol

Gene Name

GenBank Accession No.

Function

CSNK1E

Casein kinase 1, epsilon

NM_001894

NM_152221

Serine/threonine protein kinase found in cytoplasm.

DKK3

Dickkopf 3 homolog

NM_013253

NM_015881

NM_001018057

Secreted protein involved in embryonic development via Wnt pathway.

SFRP1

Secreted frizzled-related protein 1

NM_003012

Soluble modulator of Wnt signaling. Maybe involved in polarity of photoreceptor cells.

KREMEN1

Kringle containing transmembrane protein 1

NM_032045

NM_153379

NM_001039570

NM_001039571

Involved in modulating Wnt signaling.

WNT9A

Wingless-type MMTV integration site family, member 9A

NM_003395

Member of WNT gene family that encodes secreted signaling proteins. Expressed in gastric cancer cell lines.

GSK3A

Glycogen synthase kinase 3 alpha

NM_019884

Multifunctional Ser/Thr protein kinase involved in WNT and PI3K signaling pathways.

RARA1

Retinoic acid receptor, alpha

NM_000964

NM_001033603

NM_001145301

Nuclear retinoic acid receptor. Regulates transcription. Involved with apoptosis, differentiation.

LRP1

Low density lipoprotein receptor -related protein 1

NM_002332

Endocytic receptor involved in intracellular signaling, lipid homeostasis and clearance of apoptotic cells.

MDM2

p53 E3 ubiquitin protein ligase homolog

NM_002392

NM_006878

NM_006880

NM_006881

NM_006882

NM_001145337

NM_001145339

Nuclear phosphoprotein that inhibits transactivation by p53, has E3 ubiquitin ligase activity, and affects cell cycle, apoptosis, and tumorigenesis.

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Table 3b: Description of diabetes-related genes analyzed by Q-PCR.

Symbol

Gene Name

GenBank Accession No.

Function

RPS6KA4

Ribosomal protein S6 kinase,90kDa, polypeptide 4

NM_001006944

NM_003942

Member of ribosomal S6 kinase family of Ser/Thr kinases.

ADAMTS9

ADAM metallopeptidase with thrombospondin type 1 motif, 9

NM_182920

NM_182921

Member of the ADAMTS (a disintegrin and metalloproteinase with thrombospondin motifs) protein family. Implicated in the cleavage of proteoglycans and the inhibition of angiogenesis. 

VEGFA

Vascular endothelial growth factor A

NM_001025366

NM_001025367

NM_001025368

NM_001025369

NM_001025370

NM_001033756

NM_001171622

NM_001171623

NM_001171624

NM_001171625

NM_001171626

NM_001171627

NM_001171628

NM_001171629

NM_001171630

NM_001204384

NM_001204385

NM_003376

Member of PDGF/VEGF growth factor family.

Acts on endothelial cells.

Causes increased vascular permeability, angiogenesis, vasculogenesis, endothelial cell growth, cell migration, and inhibits apoptosis.

Mutations in this gene have been associated with proliferative and non-proliferative diabetic retinopathy.